| Final 10:00 | | time | gap | L | 50m | | 1. Abdalla Nasr |  Egypt | 53.29s | | 3 | 25.02s | | 2. Jarden Eaton |  South Africa | 53.45s | +0.16s | 5 | 24.49s | | 3. Jackson Abeku Gyekye |  Ghana | 53.80s | +0.51s | 4 | 25.23s | | 4. Steven Killian Aimabale |  Senegal | 54.12s | +0.83s | 6 | 25.23s | | 5. Kaydn Kairav Naidoo | South Africa | 54.16s | +0.87s | 2 | 25.14s | | 6. Abd El Rahman Atia | Egypt | 55.49s | +2.20s | 7 | 25.80s | | 7. Fares Benzidoune |  Algeria | 55.91s | +2.62s | 1 | 25.65s | | 8. Alexander Skinner |  Namibia | 56.56s | +3.27s | 8 | 26.03s |
| Venue: Borteyman Aquatic Centre. Event 11. | | World Record: Caleb Dressl, United States 49.45s OG Tokyo, Japan 31st July 2021 | | African Record: Chad Le Clos, South Africa 50.56s WC Kazan, Russia 8th August 2015 | | Africa Games Record: Chad Le Clos, South Africa 51.24sBrazzaville, Congo 7th September 2015 |
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